In a multi-group collaborative involving the National Emerging Infectious Disease Laboratories (NEIDL), the Center for Regenerative Medicine (CReM), and the Center for Network Systems Biology (CNSB), scientists have reported the first map of the molecular responses of human lung cells to infection by SARS-CoV-2. By combining bioengineered human alveolar cells with sophisticated, highly precise mass spectrometry technology, Boston University School of Medicine (BUSM) researchers have identified host proteins and pathways in lung cells whose levels change upon infection by the SARS-CoV-2, providing insights into disease pathology and new therapeutic targets to block COVID-19.
They found a crucial type of
protein modification called “phosphorylation” becomes aberrant in these
infected lung cells. Phosphorylation of proteins play a major role in
regulating protein function inside the cells of an organism and both protein
abundance and protein phosphorylation are typically highly controlled processes
in the case of normal/healthy cells. However, they discovered that SARS-CoV-2
throws the lung cells into disarray, causing abnormal changes in protein
amounts and frequency of protein phosphorylation inside these cells. These
abnormal changes help the virus to multiply eventually destroy the cells. The
destruction of infected cells may result in widespread lung injury.
According to the researchers,
as soon as the SARS-CoV-2 enters the lung cells, it rapidly begins to exploit
the cell’s core resources, which are otherwise required for the cell’s normal
growth and function. “The virus uses these resources to proliferate while
evading attack by the body’s immune system. In this way new viruses form which
subsequently exit the exhausted and brutally damaged lung cell, leaving them to
self-destruct. These new viruses then infect other cells, where the same cycle
is repeated,” explains corresponding author Andrew Emili, PhD, professor of
biochemistry at BUSM.
The researchers examined lung
alveolar cells from one to 24 hours after infection with SARS-CoV-2 to
understand what changes occur in lung cells immediately (at one, three and six
hours after infection by SARS-CoV-2) and what changes occur later (at 24 hours
after infection). These changes were then compared to uninfected cells. All
proteins from infected and uninfected alveolar cells, corresponding to the
different time-points were extracted and labelled with unique barcoding tags
called “tandem mass tag.” These tags, which can be accurately detected only by
a mass spectrometer, permit robust quantification of protein and
phosphorylation abundance in cells.
“Our results showed that in
comparison to normal/uninfected lung cells, SARS-CoV-2 infected lung cells
showed dramatic changes in the abundance of thousands of proteins and
phosphorylation events,” said Darrell Kotton, MD, professor of pathology &
laboratory medicine at BUSM and director of the CReM.
“Moreover, our data also
showed that the SARS-CoV-2 virus induces a significant number of these changes
as early as one hour post infection and lays the foundation for a complete
hijack of the host lung cells,” adds Elke M?hlberger, PhD, associate professor
of microbiology and principal investigator at the NEIDL.
“There are important
biological features specific to lung cells that are not reproduced by other
cell types commonly used to study viral infection,” said Andrew Wilson, MD,
associate professor of medicine at BUSM and CReM investigator. “Studying the
virus in the context of the cell type that is most damaged in patients is
likely to yield insights that we wouldn’t be able to see in other model
systems.”
The researchers also analyzed
their data to identify prospective opportunities for COVID-19 treatment and
found that at least 18 pre-existing clinically approved drugs (developed
originally for other medical conditions/diseases) can be potentially
re-purposed for use towards COVID-19 therapy. These drugs have shown
exceptional promise to block the proliferation of the SARS-CoV-2 in lung cells.
The researchers believe this
information is invaluable and paves the way for newer, potentially promising
and more importantly, a cost-effective and time-saving therapeutic strategy to
combat COVID-19.
Researchers Raghuveera Kumar
Goel, PhD; Adam Hume, PhD; Jessie Huang, PhD; Kristy Abo, BA; Rhiannon Werder,
PhD and Ellen Suder, BS, also contributed to these findings.
These findings appear online
in the journal Molecular Cell.
Journal article: https://www.sciencedirect.com/science/article/pii/S1097276520308285?via%3Dihub
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